SNP Report
Basic Infomation
| Name | rs1737896 dbSNP |
|---|---|
| Location | chr:20,31027514 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1022685 | 1.00[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11907235 | 1.00[ASN][1000 genomes] |
| rs11907716 | 1.00[ASN][1000 genomes] |
| rs1407013 | 1.00[ASN][1000 genomes] |
| rs2027030 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2424874 | 0.84[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2424877 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2424884 | 1.00[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2424886 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4911090 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs6057540 | 1.00[ASN][1000 genomes] |
| rs6058569 | 1.00[ASN][1000 genomes] |
| rs6058611 | 1.00[ASN][1000 genomes] |
| rs6058656 | 0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6058674 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6087884 | 0.80[EUR][1000 genomes] |
| rs6087887 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6119232 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs6141637 | 1.00[ASN][1000 genomes] |
| rs6141640 | 1.00[ASN][1000 genomes] |
| rs6141641 | 1.00[ASN][1000 genomes] |
| rs911129 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PLAGL2 | Distal transcriptional regulation |
| POFUT1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014