SNP Report
Basic Infomation
| Name | rs6094173 dbSNP |
|---|---|
| Location | chr:20,44201671 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 130)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1005455 | 0.91[EUR][1000 genomes] |
| rs10485456 | 1.00[ASN][1000 genomes] |
| rs12479541 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12479606 | 1.00[ASN][1000 genomes] |
| rs12479752 | 1.00[ASN][1000 genomes] |
| rs12479783 | 1.00[ASN][1000 genomes] |
| rs12479865 | 1.00[ASN][1000 genomes] |
| rs12480155 | 1.00[ASN][1000 genomes] |
| rs12480391 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs12480392 | 1.00[ASN][1000 genomes] |
| rs12480402 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs12480626 | 1.00[ASN][1000 genomes] |
| rs12480997 | 1.00[ASN][1000 genomes] |
| rs12481030 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs12481362 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs12481374 | 1.00[ASN][1000 genomes] |
| rs12481641 | 1.00[ASN][1000 genomes] |
| rs1487313 | 1.00[ASN][1000 genomes] |
| rs1569613 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1569614 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1569615 | 0.85[AFR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1569616 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16990390 | 1.00[ASN][1000 genomes] |
| rs17348421 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs17433181 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1977096 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2050095 | 0.89[EUR][1000 genomes] |
| rs2250860 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2272956 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2425722 | 0.91[EUR][1000 genomes] |
| rs2868304 | 0.96[EUR][1000 genomes] |
| rs2868305 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2868306 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2868307 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2868308 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2868309 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2903786 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2903787 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs3091845 | 0.97[EUR][1000 genomes] |
| rs3092506 | 0.96[EUR][1000 genomes] |
| rs35051068 | 0.81[EUR][1000 genomes] |
| rs3817887 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4302272 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4608588 | 1.00[ASN][1000 genomes] |
| rs4810457 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4812910 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs4812911 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4812912 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs4812919 | 1.00[ASN][1000 genomes] |
| rs4812920 | 1.00[ASN][1000 genomes] |
| rs4812925 | 1.00[ASN][1000 genomes] |
| rs4812941 | 1.00[ASN][1000 genomes] |
| rs4812942 | 1.00[ASN][1000 genomes] |
| rs4812951 | 1.00[ASN][1000 genomes] |
| rs4812956 | 1.00[ASN][1000 genomes] |
| rs55642155 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56312640 | 0.99[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs57700915 | 0.98[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs58384175 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs59190933 | 1.00[ASN][1000 genomes] |
| rs6017612 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6017613 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6017614 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6017615 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6017616 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6017618 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6017619 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6017620 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6017621 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6017625 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6017626 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6032300 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6032301 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6032302 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6032303 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6032305 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6032307 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6032309 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6032310 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6032311 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6032312 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6032313 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6032314 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6032315 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6032316 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6032317 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6032318 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6032319 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6032321 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6032322 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6032323 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6032324 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6032325 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6032327 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6032328 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6032339 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6032340 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6032343 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6094168 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6104214 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6104218 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6104222 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6104231 | 0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6104232 | 0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6104233 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61438890 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs62205619 | 0.96[EUR][1000 genomes] |
| rs62205623 | 0.97[EUR][1000 genomes] |
| rs62205644 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs62207162 | 0.98[EUR][1000 genomes] |
| rs6514008 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6514009 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6514010 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6514011 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6514012 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs719996 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs719997 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7263748 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7264976 | 0.98[EUR][1000 genomes] |
| rs7265026 | 0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7265308 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7273669 | 0.97[EUR][1000 genomes] |
| rs7274563 | 0.98[EUR][1000 genomes] |
| rs7274685 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7274789 | 0.94[EUR][1000 genomes] |
| rs8121615 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs8121640 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs8122982 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs932389 | 0.96[EUR][1000 genomes] |
| rs988462 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CCNB1IP1P2 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014