SNP Report
Basic Infomation
| Name | rs6089096 dbSNP |
|---|---|
| Location | chr:20,30433139 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10485497 | 1.00[CHB][hapmap] |
| rs11699897 | 1.00[CHB][hapmap] |
| rs12480063 | 1.00[CHB][hapmap] |
| rs13041282 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13041425 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1887731 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35574032 | 0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35760006 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs41287078 | 1.00[ASN][1000 genomes] |
| rs57532134 | 1.00[ASN][1000 genomes] |
| rs6060563 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
| rs6061015 | 1.00[CHB][hapmap] |
| rs6061020 | 1.00[CHB][hapmap] |
| rs6061022 | 1.00[CHB][hapmap] |
| rs6087786 | 1.00[CHB][hapmap] |
| rs62206283 | 1.00[ASN][1000 genomes] |
| rs62206284 | 1.00[ASN][1000 genomes] |
| rs62206285 | 1.00[ASN][1000 genomes] |
| rs7266721 | 1.00[CHB][hapmap] |
| rs8120082 | 1.00[ASN][1000 genomes] |
| rs8125078 | 1.00[CHB][hapmap] |
| rs8125378 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DUSP15 | Distal transcriptional regulation |
| FOXS1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014