SNP Report
Basic Infomation
| Name | rs6061020 dbSNP |
|---|---|
| Location | chr:20,30479240 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10485497 | 1.00[CHB][hapmap] |
| rs11699897 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12480063 | 1.00[CHB][hapmap] |
| rs13041282 | 1.00[CHB][hapmap] |
| rs6058480 | 1.00[CEU][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6061015 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6061022 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6087786 | 1.00[CHB][hapmap] |
| rs6089096 | 1.00[CHB][hapmap] |
| rs7266721 | 1.00[CHB][hapmap] |
| rs8125078 | 1.00[CHB][hapmap];0.81[LWK][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs8125378 | 1.00[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TTLL9 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014