SNP Report
Name | rs6032589   dbSNP |
---|---|
Location | chr:20,44559598 |
Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs16990951 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs2294212 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs2294213 | 0.91[EUR][1000 genomes] |
rs3363 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs3746503 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs3746508 | 0.86[ASN][1000 genomes] |
rs3746509 | 0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs3746511 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs3746512 | 0.86[ASN][1000 genomes] |
rs6017717 | 0.84[ASN][1000 genomes] |
rs6032597 | 0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6032601 | 0.86[ASN][1000 genomes] |
rs6032602 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6094229 | 0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6104404 | 0.84[ASN][1000 genomes] |
rs6124759 | 0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
PCIF1 | Proximal transcriptional regulation |
DNTTIP1 | Distal transcriptional regulation |
SPATA25 | Distal transcriptional regulation |
NEURL2 | Distal transcriptional regulation |
CTSA | Distal transcriptional regulation |
TNNC2 | Distal transcriptional regulation |
LPCAT1 | Distal transcriptional regulation |
PLTP | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014