SNP Report
Basic Infomation
| Name | rs6032589 dbSNP |
|---|---|
| Location | chr:20,44559598 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs16990951 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2294212 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2294213 | 0.91[EUR][1000 genomes] |
| rs3363 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3746503 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3746508 | 0.86[ASN][1000 genomes] |
| rs3746509 | 0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs3746511 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs3746512 | 0.86[ASN][1000 genomes] |
| rs6017717 | 0.84[ASN][1000 genomes] |
| rs6032597 | 0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6032601 | 0.86[ASN][1000 genomes] |
| rs6032602 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6094229 | 0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6104404 | 0.84[ASN][1000 genomes] |
| rs6124759 | 0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PCIF1 | Proximal transcriptional regulation |
| DNTTIP1 | Distal transcriptional regulation |
| SPATA25 | Distal transcriptional regulation |
| NEURL2 | Distal transcriptional regulation |
| CTSA | Distal transcriptional regulation |
| TNNC2 | Distal transcriptional regulation |
| LPCAT1 | Distal transcriptional regulation |
| PLTP | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014