SNP Report
Name | rs2294213   dbSNP |
---|---|
Location | chr:20,44540692 |
Allele | C/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11569623 | 1.00[YRI][hapmap];0.84[AFR][1000 genomes] |
rs11569636 | 1.00[YRI][hapmap];0.84[AFR][1000 genomes] |
rs16990951 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
rs2294212 | 1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs3363 | 1.00[CEU][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes] |
rs3746503 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes] |
rs3746509 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
rs3746511 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes] |
rs6032589 | 0.91[EUR][1000 genomes] |
rs6032597 | 0.91[EUR][1000 genomes] |
rs6032602 | 1.00[CEU][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes] |
rs6094229 | 0.87[EUR][1000 genomes] |
rs6104404 | 0.81[JPT][hapmap] |
rs6124759 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
PLTP | Proximal transcriptional regulation |
WFDC3 | Distal transcriptional regulation |
DNTTIP1 | Distal transcriptional regulation |
ZSWIM1 | Distal transcriptional regulation |
CTSA | Distal transcriptional regulation |
NEURL2 | Distal transcriptional regulation |
PCIF1 | Distal transcriptional regulation |
ZNF335 | Distal transcriptional regulation |
NCOA5 | Distal transcriptional regulation |
SNX21 | Distal transcriptional regulation |
SPATA25 | Distal transcriptional regulation |
ZNF414 | Distal transcriptional regulation |
PLTP | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014