SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 14)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11569623	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs11569636	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs16990951	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2294212	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3363	1.00[CEU][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes]
rs3746503	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs3746509	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs3746511	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs6032589	0.91[EUR][1000 genomes]
rs6032597	0.91[EUR][1000 genomes]
rs6032602	1.00[CEU][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes]
rs6094229	0.87[EUR][1000 genomes]
rs6104404	0.81[JPT][hapmap]
rs6124759	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
PLTP	Proximal transcriptional regulation
WFDC3	Distal transcriptional regulation
DNTTIP1	Distal transcriptional regulation
ZSWIM1	Distal transcriptional regulation
CTSA	Distal transcriptional regulation
NEURL2	Distal transcriptional regulation
PCIF1	Distal transcriptional regulation
ZNF335	Distal transcriptional regulation
NCOA5	Distal transcriptional regulation
SNX21	Distal transcriptional regulation
SPATA25	Distal transcriptional regulation
ZNF414	Distal transcriptional regulation
PLTP	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 2)

eQTL related gene	Source
PLTP	Pritchard
PLTP	Pritchard