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rVarBase
SNP Report
Basic Infomation
Name
rs11569623  
dbSNP
Location
chr:20,44543284
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11569302
1.00[AMR][1000 genomes]
rs11569636
1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2294212
1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2294213
1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs3746503
0.88[LWK][hapmap];1.00[YRI][hapmap]
rs3746511
0.88[LWK][hapmap];1.00[YRI][hapmap]
rs41303933
1.00[AMR][1000 genomes]
rs6032602
1.00[YRI][hapmap]
rs6124759
1.00[YRI][hapmap]
rSNP related genes
Symbol
Regulation type
PLTP
Proximal transcriptional regulation
PCIF1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
SHE
seeQTL