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rVarBase
SNP Report
Basic Infomation
Name
rs602772  
dbSNP
Location
chr:12,50398913
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1967110
1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2232208
1.00[MEX][hapmap]
rs2603113
1.00[MEX][hapmap]
rs296751
1.00[EUR][1000 genomes]
rs296752
1.00[EUR][1000 genomes]
rs370774
1.00[EUR][1000 genomes]
rs438304
0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs598144
0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs629874
1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
RACGAP1
Proximal transcriptional regulation
RACGAP1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)