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rVarBase
SNP Report
Basic Infomation
Name
rs2232208  
dbSNP
Location
chr:12,50501249
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 2)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1967110
1.00[MEX][hapmap]
rs602772
1.00[MEX][hapmap]
rSNP related genes
Symbol
Regulation type
COX14
Proximal transcriptional regulation
GPD1
Distal transcriptional regulation
SMARCD1
Distal transcriptional regulation
CERS5
Distal transcriptional regulation
GPD1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
eQTL related gene
Source
SHE
seeQTL
PRICKLE2
seeQTL
COL5A3
seeQTL
MTUS1
seeQTL
T
seeQTL