SNP Report
Basic Infomation
| Name | rs2603113 dbSNP |
|---|---|
| Location | chr:12,50202431 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11169158 | 0.97[ASN][1000 genomes] |
| rs11169159 | 0.97[ASN][1000 genomes] |
| rs12305896 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12313989 | 0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1967110 | 1.00[MEX][hapmap] |
| rs2603103 | 0.87[ASW][hapmap] |
| rs2720288 | 0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2720289 | 0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2720299 | 0.87[ASW][hapmap] |
| rs3741556 | 0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs602772 | 1.00[MEX][hapmap] |
| rs67453698 | 0.85[ASN][1000 genomes] |
| rs72644870 | 0.97[ASN][1000 genomes] |
| rs72644871 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs897055 | 1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NCKAP5L | Proximal transcriptional regulation |
| NCKAP5L | Distal transcriptional regulation |
| BCDIN3D-AS1 | Distal transcriptional regulation |
| BCDIN3D | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014