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rVarBase
SNP Report
Basic Infomation
Name
rs12313989  
dbSNP
Location
chr:12,50194723
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11169158
0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11169159
0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12305896
0.97[ASN][1000 genomes]
rs12425872
0.86[EUR][1000 genomes]
rs2603113
0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2720288
0.97[ASN][1000 genomes]
rs2720289
0.97[ASN][1000 genomes]
rs3741556
0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67453698
0.82[ASN][1000 genomes]
rs72644869
0.86[EUR][1000 genomes]
rs72644870
0.94[ASN][1000 genomes]
rs72644871
0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs897055
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
NCKAP5L
Proximal transcriptional regulation
NCKAP5L
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)