SNP Report
Basic Infomation
| Name | rs59830440 dbSNP |
|---|---|
| Location | chr:11,64008895 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs167658 | 1.00[EUR][1000 genomes] |
| rs2232411 | 1.00[ASN][1000 genomes] |
| rs28395879 | 1.00[ASN][1000 genomes] |
| rs57155426 | 1.00[EUR][1000 genomes] |
| rs57290985 | 1.00[EUR][1000 genomes] |
| rs576548 | 1.00[EUR][1000 genomes] |
| rs59587183 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs60466708 | 1.00[EUR][1000 genomes] |
| rs60997246 | 1.00[ASN][1000 genomes] |
| rs61246275 | 1.00[EUR][1000 genomes] |
| rs61757725 | 1.00[ASN][1000 genomes] |
| rs61761266 | 1.00[EUR][1000 genomes] |
| rs61761275 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61761277 | 1.00[EUR][1000 genomes] |
| rs61761284 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs633561 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FKBP2 | Proximal transcriptional regulation |
| ENSG00000256940 | Proximal transcriptional regulation |
| ENSG00000237436 | Distal transcriptional regulation |
| ENO1-IT1 | Distal transcriptional regulation |
| ENO1 | Distal transcriptional regulation |
| GPRC5A | Distal transcriptional regulation |
| ENSG00000264920 | Distal transcriptional regulation |
| TBC1D7 | Distal transcriptional regulation |
| TIMM17B | Distal transcriptional regulation |
| PQBP1 | Distal transcriptional regulation |
| C11orf24 | Distal transcriptional regulation |
| PLCB3 | Distal transcriptional regulation |
| BZRAP1 | Distal transcriptional regulation |
| BZRAP1-AS1 | Distal transcriptional regulation |
| WDR74 | Distal transcriptional regulation |
| OTUB1 | Distal transcriptional regulation |
| TRMT112 | Distal transcriptional regulation |
| PRDX5 | Distal transcriptional regulation |
| HIST1H2BC | Distal transcriptional regulation |
| HIST1H2AC | Distal transcriptional regulation |
| MIR17 | Distal transcriptional regulation |
| MIR18A | Distal transcriptional regulation |
| MIR19A | Distal transcriptional regulation |
| MIR20A | Distal transcriptional regulation |
| MIR19B1 | Distal transcriptional regulation |
| MIR92A1 | Distal transcriptional regulation |
| ENSG00000236935 | Distal transcriptional regulation |
| CCDC88B | Distal transcriptional regulation |
| MACROD1 | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| BAD | Distal transcriptional regulation |
| TEX40 | Distal transcriptional regulation |
| ESRRA | Distal transcriptional regulation |
| RPS6KA4 | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| KCNK4 | Distal transcriptional regulation |
| SF1 | Distal transcriptional regulation |
| ENSG00000269038 | Distal transcriptional regulation |
| CCDC51 | Distal transcriptional regulation |
| TMA7 | Distal transcriptional regulation |
| FKBP2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014