SNP Report
Basic Infomation
| Name | rs59587183 dbSNP |
|---|---|
| Location | chr:11,63995980 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs167658 | 1.00[EUR][1000 genomes] |
| rs2232411 | 0.87[ASN][1000 genomes] |
| rs28395879 | 0.87[ASN][1000 genomes] |
| rs57155426 | 1.00[EUR][1000 genomes] |
| rs57290985 | 1.00[EUR][1000 genomes] |
| rs576548 | 1.00[EUR][1000 genomes] |
| rs59830440 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs60466708 | 1.00[EUR][1000 genomes] |
| rs60997246 | 0.87[ASN][1000 genomes] |
| rs61246275 | 1.00[EUR][1000 genomes] |
| rs61757725 | 0.87[ASN][1000 genomes] |
| rs61761266 | 1.00[EUR][1000 genomes] |
| rs61761275 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs61761277 | 1.00[EUR][1000 genomes] |
| rs61761284 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs633561 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DNAJC4 | Proximal transcriptional regulation |
| TRPT1 | Proximal transcriptional regulation |
| NUDT22 | Proximal transcriptional regulation |
| CCDC88B | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| BAD | Distal transcriptional regulation |
| NUDT22 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014