SNP Report
Basic Infomation
| Name | rs59470295 dbSNP |
|---|---|
| Location | chr:17,5459481 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 65)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10445263 | 0.91[AFR][1000 genomes] |
| rs10445291 | 0.87[AFR][1000 genomes] |
| rs10445292 | 0.91[AFR][1000 genomes] |
| rs10445294 | 0.91[AFR][1000 genomes] |
| rs10445295 | 0.91[AFR][1000 genomes] |
| rs11078566 | 0.88[ASN][1000 genomes] |
| rs11078572 | 0.91[AFR][1000 genomes] |
| rs11078573 | 0.82[AFR][1000 genomes] |
| rs11649978 | 0.93[ASN][1000 genomes] |
| rs11652979 | 0.88[AFR][1000 genomes] |
| rs11653746 | 0.91[AFR][1000 genomes] |
| rs11656080 | 0.91[AFR][1000 genomes] |
| rs11656226 | 0.91[AFR][1000 genomes] |
| rs11656502 | 0.91[AFR][1000 genomes] |
| rs11657087 | 0.90[AFR][1000 genomes] |
| rs12150177 | 0.91[AFR][1000 genomes] |
| rs12150468 | 0.91[AFR][1000 genomes] |
| rs12601393 | 0.89[ASN][1000 genomes] |
| rs12601909 | 0.90[ASN][1000 genomes] |
| rs12603368 | 0.85[ASN][1000 genomes] |
| rs12603374 | 0.88[ASN][1000 genomes] |
| rs12938208 | 0.90[AFR][1000 genomes] |
| rs12938807 | 0.91[AFR][1000 genomes] |
| rs12939326 | 0.90[AFR][1000 genomes] |
| rs12939336 | 0.90[AFR][1000 genomes] |
| rs12943126 | 0.91[AFR][1000 genomes] |
| rs12946509 | 0.90[AFR][1000 genomes] |
| rs12947726 | 0.91[AFR][1000 genomes] |
| rs12949750 | 0.90[AFR][1000 genomes] |
| rs12949957 | 0.93[ASN][1000 genomes] |
| rs12950235 | 0.90[AFR][1000 genomes] |
| rs12952585 | 0.91[AFR][1000 genomes] |
| rs12952870 | 0.91[AFR][1000 genomes] |
| rs12952888 | 0.88[AFR][1000 genomes] |
| rs1980092 | 0.83[ASN][1000 genomes] |
| rs2001363 | 0.88[AFR][1000 genomes] |
| rs2137722 | 0.83[ASN][1000 genomes] |
| rs2301583 | 0.88[ASN][1000 genomes] |
| rs2716905 | 0.83[ASN][1000 genomes] |
| rs34576812 | 0.88[AFR][1000 genomes] |
| rs34676708 | 0.91[AFR][1000 genomes] |
| rs35018100 | 0.94[ASN][1000 genomes] |
| rs35156888 | 0.90[AFR][1000 genomes] |
| rs35182192 | 0.93[ASN][1000 genomes] |
| rs35318808 | 0.90[AFR][1000 genomes] |
| rs35568355 | 0.93[ASN][1000 genomes] |
| rs35666476 | 0.90[AFR][1000 genomes] |
| rs35865671 | 0.91[AFR][1000 genomes] |
| rs35952787 | 0.88[AFR][1000 genomes] |
| rs4564631 | 0.91[AFR][1000 genomes] |
| rs52795654 | 0.90[AFR][1000 genomes] |
| rs58421255 | 0.81[ASN][1000 genomes] |
| rs59225436 | 0.81[ASN][1000 genomes] |
| rs61753136 | 0.90[AFR][1000 genomes] |
| rs61753137 | 0.90[AFR][1000 genomes] |
| rs71368566 | 0.86[AFR][1000 genomes] |
| rs71368567 | 0.88[AFR][1000 genomes] |
| rs71368569 | 0.91[AFR][1000 genomes] |
| rs71368570 | 0.91[AFR][1000 genomes] |
| rs71368571 | 0.91[AFR][1000 genomes] |
| rs71368572 | 0.90[AFR][1000 genomes] |
| rs71368573 | 0.91[AFR][1000 genomes] |
| rs71368574 | 0.90[AFR][1000 genomes] |
| rs7215856 | 0.93[ASN][1000 genomes] |
| rs8079072 | 0.93[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NLRP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014