SNP Report
Basic Infomation
| Name | rs11656226 dbSNP |
|---|---|
| Location | chr:17,5456989 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 199)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10445263 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10445291 | 0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10445292 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10445294 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10445295 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11078567 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11078568 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11078569 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11078570 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11078571 | 0.84[AFR][1000 genomes] |
| rs11078572 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11078573 | 0.90[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11649976 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11649978 | 0.96[EUR][1000 genomes] |
| rs11650171 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11650176 | 0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11650380 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11651072 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11651400 | 0.94[EUR][1000 genomes] |
| rs11651595 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11651816 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11652692 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11652700 | 1.00[ASN][1000 genomes] |
| rs11652979 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11653197 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11653450 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11653496 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11653580 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11653654 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11653706 | 0.84[AFR][1000 genomes] |
| rs11653746 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11653832 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11653957 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11654130 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11654176 | 0.84[AFR][1000 genomes] |
| rs11654180 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11654272 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11654410 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11654528 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11654668 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11655423 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11655807 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11656080 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11656183 | 0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11656502 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11656724 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11656975 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11656977 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11657087 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11657249 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11657320 | 0.94[EUR][1000 genomes] |
| rs11657333 | 1.00[ASN][1000 genomes] |
| rs11657352 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11657416 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11657747 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11658716 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11659052 | 0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12150023 | 0.86[EUR][1000 genomes] |
| rs12150026 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12150177 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12150286 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12150289 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12150292 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12150468 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12937062 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12937100 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12937334 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12938206 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12938208 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12938807 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12939326 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12939336 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12940090 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12940290 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12940860 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12940946 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12941416 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12942931 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12943068 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12943126 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12946509 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12946897 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12947593 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12947726 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12948705 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12949750 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12949957 | 0.96[EUR][1000 genomes] |
| rs12950024 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12950235 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12950902 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12952208 | 1.00[ASN][1000 genomes] |
| rs12952585 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12952718 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12952870 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12952888 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2001363 | 0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2137722 | 0.94[EUR][1000 genomes] |
| rs34031227 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34156685 | 0.94[EUR][1000 genomes] |
| rs34171685 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34198160 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34211727 | 0.94[EUR][1000 genomes] |
| rs34273465 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34337726 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs34402543 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34402930 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34456674 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34476632 | 1.00[ASN][1000 genomes] |
| rs34541819 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34576812 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34634632 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34676708 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34700090 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34733791 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34738364 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34878096 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34885369 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34888086 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34981266 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35063419 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35156888 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35182192 | 0.96[EUR][1000 genomes] |
| rs35186716 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35201225 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35291181 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35318808 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35357500 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35364521 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35410467 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35548793 | 0.96[EUR][1000 genomes] |
| rs35568355 | 0.96[EUR][1000 genomes] |
| rs35596958 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35646276 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35665358 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35666476 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35687615 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35805263 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35865671 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35913493 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35918709 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35952787 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35988870 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs36012620 | 1.00[ASN][1000 genomes] |
| rs36072614 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs36089653 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs36179145 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4564631 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs52795654 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56872041 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59470295 | 0.91[AFR][1000 genomes] |
| rs60808948 | 0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs61388575 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61753136 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61753137 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71362567 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71368180 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71368181 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71368553 | 0.94[EUR][1000 genomes] |
| rs71368554 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71368555 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71368556 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71368557 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71368558 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71368561 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71368562 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71368563 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71368564 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71368565 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71368566 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71368567 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71368569 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71368570 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71368571 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71368572 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71368573 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71368574 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71370068 | 0.83[ASN][1000 genomes] |
| rs7207278 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7207641 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7208745 | 1.00[ASN][1000 genomes] |
| rs7215856 | 0.98[EUR][1000 genomes] |
| rs7215868 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7216010 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7222565 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7223362 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7223514 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7224037 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7224061 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7224071 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7224277 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7226185 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8070450 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8070555 | 0.96[EUR][1000 genomes] |
| rs8074263 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8077225 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8078947 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8079072 | 0.96[EUR][1000 genomes] |
| rs8079834 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9675332 | 0.84[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NLRP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014