SNP Report

Basic Infomation

Name	rs11654176 dbSNP
Location	chr:17,5457838
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 51)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10445263	0.84[AFR][1000 genomes]
rs10445291	0.82[YRI][hapmap]
rs10445292	0.82[YRI][hapmap];0.84[AFR][1000 genomes]
rs10445294	0.84[AFR][1000 genomes]
rs10445295	0.84[AFR][1000 genomes]
rs11078571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11078572	0.84[AFR][1000 genomes]
rs11650371	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11652907	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11652979	0.81[AFR][1000 genomes]
rs11653706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11653746	0.84[AFR][1000 genomes]
rs11656080	0.84[AFR][1000 genomes]
rs11656226	0.84[AFR][1000 genomes]
rs11656502	0.82[YRI][hapmap];0.84[AFR][1000 genomes]
rs11657087	0.83[AFR][1000 genomes]
rs12150177	0.84[AFR][1000 genomes]
rs12150468	0.84[AFR][1000 genomes]
rs12938208	0.83[AFR][1000 genomes]
rs12938807	0.84[AFR][1000 genomes]
rs12939326	0.83[AFR][1000 genomes]
rs12939336	0.83[AFR][1000 genomes]
rs12943126	0.84[AFR][1000 genomes]
rs12946509	0.83[AFR][1000 genomes]
rs12947726	0.84[AFR][1000 genomes]
rs12949750	0.83[AFR][1000 genomes]
rs12950235	0.83[AFR][1000 genomes]
rs12952585	0.84[AFR][1000 genomes]
rs12952870	0.82[YRI][hapmap];0.84[AFR][1000 genomes]
rs12952888	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs2001363	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs2175827	0.87[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs34576812	0.81[AFR][1000 genomes]
rs34676708	0.84[AFR][1000 genomes]
rs35156888	0.83[AFR][1000 genomes]
rs35318808	0.83[AFR][1000 genomes]
rs35666476	0.83[AFR][1000 genomes]
rs35865671	0.84[AFR][1000 genomes]
rs35952787	0.81[AFR][1000 genomes]
rs4564631	0.84[AFR][1000 genomes]
rs52795654	0.83[AFR][1000 genomes]
rs61753136	0.83[AFR][1000 genomes]
rs61753137	0.83[AFR][1000 genomes]
rs71368567	0.81[AFR][1000 genomes]
rs71368569	0.84[AFR][1000 genomes]
rs71368570	0.84[AFR][1000 genomes]
rs71368571	0.84[AFR][1000 genomes]
rs71368572	0.83[AFR][1000 genomes]
rs71368573	0.84[AFR][1000 genomes]
rs71368574	0.83[AFR][1000 genomes]
rs9675332	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
NLRP1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)