SNP Report
Basic Infomation
| Name | rs11652907 dbSNP |
|---|---|
| Location | chr:17,5449665 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11078569 | 0.90[LWK][hapmap] |
| rs11078571 | 1.00[CEU][hapmap];0.86[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11650371 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs11653706 | 1.00[CEU][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs11654176 | 1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11657158 | 0.90[ASN][1000 genomes] |
| rs11657416 | 0.90[LWK][hapmap] |
| rs11657455 | 0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs12602431 | 0.89[ASN][1000 genomes] |
| rs2175827 | 0.80[AMR][1000 genomes] |
| rs3744717 | 0.86[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.92[ASN][1000 genomes] |
| rs4577136 | 0.90[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs4790775 | 0.90[ASN][1000 genomes] |
| rs72827634 | 0.92[ASN][1000 genomes] |
| rs72827635 | 0.92[ASN][1000 genomes] |
| rs871928 | 0.81[MEX][hapmap] |
| rs9674729 | 0.91[ASN][1000 genomes] |
| rs9675332 | 1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NLRP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 11)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014