SNP Report
Basic Infomation
| Name | rs11657158 dbSNP |
|---|---|
| Location | chr:17,5423324 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10459913 | 0.83[AFR][1000 genomes] |
| rs11652907 | 0.90[ASN][1000 genomes] |
| rs11657455 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11658667 | 0.83[AFR][1000 genomes] |
| rs12602431 | 0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2175827 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs3744717 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4577136 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4790775 | 0.99[ASN][1000 genomes] |
| rs4790780 | 0.83[AFR][1000 genomes] |
| rs72827634 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs72827635 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs8072160 | 0.83[AFR][1000 genomes] |
| rs871928 | 0.83[AFR][1000 genomes] |
| rs884367 | 0.83[AFR][1000 genomes] |
| rs9674729 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NLRP1 | Proximal transcriptional regulation |
| NLRP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014