SNP Report
Basic Infomation
| Name | rs2301583 dbSNP |
|---|---|
| Location | chr:17,5424886 |
| Allele | G/T/A |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11078566 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs11649978 | 0.81[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs12601393 | 0.98[ASN][1000 genomes] |
| rs12601909 | 0.91[ASN][1000 genomes] |
| rs12603368 | 0.97[ASN][1000 genomes] |
| rs12603374 | 0.97[ASN][1000 genomes] |
| rs12949957 | 0.81[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs1980092 | 1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs2137722 | 1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs2716905 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs35018100 | 0.90[ASN][1000 genomes] |
| rs35182192 | 0.92[ASN][1000 genomes] |
| rs35568355 | 0.92[ASN][1000 genomes] |
| rs56882959 | 0.85[ASN][1000 genomes] |
| rs58421255 | 0.90[ASN][1000 genomes] |
| rs59225436 | 0.90[ASN][1000 genomes] |
| rs59470295 | 0.88[ASN][1000 genomes] |
| rs7215856 | 0.92[ASN][1000 genomes] |
| rs8079072 | 0.81[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NLRP1 | Proximal transcriptional regulation |
| NLRP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014