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rVarBase
SNP Report
Basic Infomation
Name
rs58000136  
dbSNP
Location
chr:2,65455720
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11890509
1.00[AMR][1000 genomes]
rs17030025
1.00[AMR][1000 genomes]
rs35295972
0.84[AFR][1000 genomes]
rs55718083
0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57850847
0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60410411
0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6720162
1.00[AMR][1000 genomes]
rs73936434
0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73936438
1.00[AMR][1000 genomes]
rs73936439
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7568071
0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7603729
0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rSNP related genes
Symbol
Regulation type
CEP68
Distal transcriptional regulation
RAB1A
Distal transcriptional regulation
ENSG00000172974
Distal transcriptional regulation
ENSG00000204929
Distal transcriptional regulation
SPRED2
Distal transcriptional regulation
ENSG00000212195
Distal transcriptional regulation
ENSG00000244534
Distal transcriptional regulation
ACTR2
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)