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rVarBase
SNP Report
Basic Infomation
Name
rs11890509  
dbSNP
Location
chr:2,65431086
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs17030025
0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55718083
1.00[AMR][1000 genomes]
rs57850847
1.00[AMR][1000 genomes]
rs58000136
1.00[AMR][1000 genomes]
rs60039132
0.87[AFR][1000 genomes]
rs60410411
1.00[AMR][1000 genomes]
rs6720162
0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73936434
1.00[AMR][1000 genomes]
rs73936438
0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73936439
1.00[AMR][1000 genomes]
rs7568071
1.00[AMR][1000 genomes]
rs7603729
1.00[AMR][1000 genomes]
rSNP related genes
Symbol
Regulation type
ENSG00000172974
Proximal transcriptional regulation
VDAC2
Distal transcriptional regulation
ACTR2
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)