SNP Report
Basic Infomation
| Name | rs57848393 dbSNP |
|---|---|
| Location | chr:12,48108517 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 38)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12423045 | 0.95[EUR][1000 genomes] |
| rs12425816 | 1.00[ASN][1000 genomes] |
| rs35784744 | 1.00[ASN][1000 genomes] |
| rs58350284 | 0.84[AFR][1000 genomes] |
| rs60045275 | 0.84[AFR][1000 genomes] |
| rs60186089 | 0.94[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67201012 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67408202 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7303895 | 0.87[EUR][1000 genomes] |
| rs7304743 | 0.87[EUR][1000 genomes] |
| rs73102195 | 0.87[EUR][1000 genomes] |
| rs73102201 | 0.87[EUR][1000 genomes] |
| rs73104103 | 0.87[EUR][1000 genomes] |
| rs73104104 | 0.87[EUR][1000 genomes] |
| rs73104111 | 0.87[EUR][1000 genomes] |
| rs73104115 | 0.87[EUR][1000 genomes] |
| rs73104116 | 0.87[EUR][1000 genomes] |
| rs73104138 | 0.95[EUR][1000 genomes] |
| rs73104143 | 0.95[EUR][1000 genomes] |
| rs73104148 | 0.95[EUR][1000 genomes] |
| rs73104152 | 0.95[EUR][1000 genomes] |
| rs73104155 | 0.95[EUR][1000 genomes] |
| rs73104161 | 0.95[EUR][1000 genomes] |
| rs73104163 | 0.95[EUR][1000 genomes] |
| rs73104177 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73104184 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73104188 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73104190 | 1.00[ASN][1000 genomes] |
| rs73104197 | 1.00[ASN][1000 genomes] |
| rs73105803 | 1.00[ASN][1000 genomes] |
| rs73105812 | 1.00[ASN][1000 genomes] |
| rs73105814 | 1.00[ASN][1000 genomes] |
| rs73105818 | 1.00[ASN][1000 genomes] |
| rs73105819 | 1.00[ASN][1000 genomes] |
| rs73105829 | 1.00[ASN][1000 genomes] |
| rs73105845 | 1.00[ASN][1000 genomes] |
| rs73105847 | 1.00[ASN][1000 genomes] |
| rs73300689 | 0.87[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000257433 | Proximal transcriptional regulation |
| HDAC7 | Distal transcriptional regulation |
| ENSG00000257433 | RNA binding protein mediated regulation |
| ENDOU | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014