SNP Report
Basic Infomation
| Name | rs57503547 dbSNP |
|---|---|
| Location | chr:1,201289971 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1627874 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17190 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1772835 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1779304 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2268158 | 1.00[ASN][1000 genomes] |
| rs2268159 | 1.00[ASN][1000 genomes] |
| rs2268162 | 1.00[ASN][1000 genomes] |
| rs2284439 | 1.00[ASN][1000 genomes] |
| rs35507614 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3820427 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs41269943 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55808337 | 0.86[ASN][1000 genomes] |
| rs56334912 | 0.86[ASN][1000 genomes] |
| rs57040590 | 0.86[ASN][1000 genomes] |
| rs57933662 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60386038 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61150106 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6701621 | 1.00[ASN][1000 genomes] |
| rs74136399 | 0.86[ASN][1000 genomes] |
| rs832153 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs860555 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs947374 | 1.00[ASN][1000 genomes] |
| rs947375 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PKP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014