SNP Report
Basic Infomation
| Name | rs2268158 dbSNP |
|---|---|
| Location | chr:1,201275442 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12078505 | 1.00[AMR][1000 genomes] |
| rs2268159 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2268162 | 1.00[ASN][1000 genomes] |
| rs2284439 | 1.00[ASN][1000 genomes] |
| rs34370053 | 1.00[AMR][1000 genomes] |
| rs3820427 | 1.00[ASN][1000 genomes] |
| rs41269943 | 1.00[ASN][1000 genomes] |
| rs55808337 | 0.86[ASN][1000 genomes] |
| rs56334912 | 0.86[ASN][1000 genomes] |
| rs57040590 | 0.86[ASN][1000 genomes] |
| rs57503547 | 1.00[ASN][1000 genomes] |
| rs61150106 | 1.00[ASN][1000 genomes] |
| rs6701621 | 1.00[ASN][1000 genomes] |
| rs74136399 | 0.86[ASN][1000 genomes] |
| rs947374 | 1.00[ASN][1000 genomes] |
| rs947375 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PKP1 | Distal transcriptional regulation |
| TNNT2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014