SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 12)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs17190	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1772835	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1779304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35507614	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3820427	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41269943	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57503547	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57933662	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60386038	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61150106	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs832153	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs860555	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
PKP1	Distal transcriptional regulation
RASA2	Distal transcriptional regulation
TNNT2	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)