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rVarBase
SNP Report
Basic Infomation
Name
rs55783246  
dbSNP
Location
chr:11,61803053
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12786494
0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12790169
0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17706767
0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2203171
0.80[EUR][1000 genomes]
rs34867475
0.87[ASN][1000 genomes]
rs34916493
0.81[ASN][1000 genomes]
rs35124768
0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35148106
0.90[EUR][1000 genomes]
rs35822010
0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
FTH1
Distal transcriptional regulation
ENSG00000269089
Distal transcriptional regulation
ENSG00000244176
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)