SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 9)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12786494	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[GIH][hapmap];0.90[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12790169	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2203171	0.81[EUR][1000 genomes]
rs35124768	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35148106	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35250539	0.82[AMR][1000 genomes]
rs35822010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55783246	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6591688	0.81[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
HIST1H2BG	Distal transcriptional regulation
HIST1H2AE	Distal transcriptional regulation
FTH1	Distal transcriptional regulation
ENSG00000269089	Distal transcriptional regulation
RAB3IL1	Distal transcriptional regulation
BEST1	Distal transcriptional regulation
ENSG00000244176	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 3)