SNP Report
Basic Infomation
| Name | rs540741 dbSNP |
|---|---|
| Location | chr:11,63823531 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231630 | 1.00[CHB][hapmap] |
| rs11231631 | 1.00[CHB][hapmap] |
| rs11231674 | 1.00[CHB][hapmap] |
| rs1188017 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2014328 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2701536 | 1.00[JPT][hapmap] |
| rs34445666 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs477400 | 0.86[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes] |
| rs478294 | 0.93[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs513552 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs530399 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs559116 | 0.90[EUR][1000 genomes] |
| rs562664 | 1.00[CEU][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7949291 | 1.00[CHB][hapmap] |
| rs7952270 | 1.00[CHB][hapmap] |
| rs947843 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs958333 | 1.00[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000256824 | Proximal transcriptional regulation |
| ENSG00000256824 | Distal transcriptional regulation |
| MACROD1 | RNA binding protein mediated regulation |
| ENSG00000256824 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014