SNP Report
Basic Infomation
| Name | rs477400 dbSNP |
|---|---|
| Location | chr:11,63817799 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1188017 | 0.88[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs2014328 | 0.95[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2701536 | 1.00[JPT][hapmap] |
| rs478294 | 0.94[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs502224 | 0.80[MEX][hapmap] |
| rs513552 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs530399 | 0.87[CEU][hapmap];0.84[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs540741 | 0.86[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes] |
| rs559116 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs562661 | 0.81[TSI][hapmap] |
| rs562664 | 0.87[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs562750 | 0.81[TSI][hapmap] |
| rs947843 | 0.88[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RCOR2 | Distal transcriptional regulation |
| MACROD1 | RNA binding protein mediated regulation |
| ENSG00000256824 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| MLF1IP | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014