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rVarBase
SNP Report
Basic Infomation
Name
rs4939493  
dbSNP
Location
chr:11,60819696
Allele
G/C
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11230578
0.81[ASN][1000 genomes]
rs12281060
0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs4938994
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4939482
0.80[MEX][hapmap]
rs7102626
0.80[MEX][hapmap]
rSNP related genes
Symbol
Regulation type
ENSG00000256733
Proximal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
eQTL related gene
Source
CD6
SCAN
DDB1
SCAN
OR10A7
SCAN
OR5A1
SCAN
C11orf83
SCAN
SLC22A12
SCAN