SNP Report
Basic Infomation
| Name | rs4933929 dbSNP |
|---|---|
| Location | chr:10,81596984 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10885528 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2259986 | 0.87[AMR][1000 genomes] |
| rs2478673 | 0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs3012976 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs388901 | 0.82[EUR][1000 genomes] |
| rs407831 | 1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.85[TSI][hapmap];0.89[YRI][hapmap] |
| rs4933801 | 0.82[EUR][1000 genomes] |
| rs59530269 | 0.85[ASN][1000 genomes] |
| rs61861443 | 0.85[EUR][1000 genomes] |
| rs7072328 | 0.87[ASN][1000 genomes] |
| rs73306831 | 0.88[ASN][1000 genomes] |
| rs7894634 | 0.86[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FAM22E | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014