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rVarBase
SNP Report
Basic Infomation
Name
rs4933677  
dbSNP
Location
chr:10,93369096
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10509629
1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10748568
0.87[GIH][hapmap]
rs10786018
0.87[GIH][hapmap]
rs10881934
1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10881935
0.86[CEU][hapmap];0.91[EUR][1000 genomes]
rs11186626
0.95[ASN][1000 genomes]
rs1970506
0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs2066276
0.87[GIH][hapmap]
rs7077656
0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
HECTD2
Distal transcriptional regulation
PPP1R3C
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
eQTL related gene
Source
BTAF1
SCAN
CYP2C9
SCAN