SNP Report
Basic Infomation
| Name | rs4809367 dbSNP |
|---|---|
| Location | chr:20,62461305 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 123)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11086127 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11086128 | 0.83[ASN][1000 genomes] |
| rs11086129 | 0.97[ASN][1000 genomes] |
| rs11086130 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs11697261 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs11698072 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11699536 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs11699646 | 0.84[EUR][1000 genomes] |
| rs11700177 | 0.83[ASN][1000 genomes] |
| rs11700372 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11700373 | 0.95[ASN][1000 genomes] |
| rs11905140 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11906437 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11906513 | 0.83[EUR][1000 genomes] |
| rs11906517 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11908487 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11908565 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs12479805 | 0.81[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs12481524 | 0.95[ASN][1000 genomes] |
| rs1887407 | 0.83[YRI][hapmap] |
| rs2004748 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2004749 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2281929 | 0.87[ASW][hapmap];0.93[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];0.90[JPT][hapmap];0.81[MEX][hapmap];0.87[TSI][hapmap];0.83[YRI][hapmap] |
| rs2315657 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4369919 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4538263 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes] |
| rs4809229 | 0.82[AMR][1000 genomes] |
| rs4809233 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4809234 | 0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4809236 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4809345 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs4809348 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4809349 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4809350 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4809351 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4809352 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4809353 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4809354 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4809356 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4809357 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4809358 | 0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4809359 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4809360 | 0.84[ASN][1000 genomes] |
| rs4809362 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4809363 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4809364 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4809365 | 0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4809366 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4809368 | 0.97[ASN][1000 genomes] |
| rs4991877 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs57498343 | 0.81[EUR][1000 genomes] |
| rs58150746 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs60086020 | 0.97[ASN][1000 genomes] |
| rs6010652 | 0.87[ASW][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.87[YRI][hapmap] |
| rs6010655 | 0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];0.94[TSI][hapmap];0.86[YRI][hapmap] |
| rs6010658 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs6010659 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6010660 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6010661 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6010664 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6010669 | 0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.95[YRI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6010671 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6010676 | 0.84[ASN][1000 genomes] |
| rs6011118 | 0.86[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap] |
| rs6011124 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6011125 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs6011126 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6011127 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6011128 | 0.84[EUR][1000 genomes] |
| rs6011129 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6011130 | 0.84[EUR][1000 genomes] |
| rs6011131 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6011137 | 0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6011138 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6011139 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6011140 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6011141 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6011142 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6011143 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6011144 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6011145 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6011146 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6011148 | 0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6011152 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6011154 | 1.00[CEU][hapmap];0.95[YRI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6011156 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6011157 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6011158 | 0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6011159 | 0.94[ASN][1000 genomes] |
| rs6011160 | 0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6011161 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6011163 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6011164 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6011165 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6011166 | 0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6011167 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6011168 | 0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6011169 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6011170 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6011171 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6011173 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs66682622 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs66780440 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs66788614 | 0.94[ASN][1000 genomes] |
| rs66791168 | 0.85[ASN][1000 genomes] |
| rs66818106 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs66859979 | 0.85[EUR][1000 genomes] |
| rs66887040 | 0.91[ASN][1000 genomes] |
| rs67078803 | 0.85[EUR][1000 genomes] |
| rs67416152 | 0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs67517207 | 0.94[ASN][1000 genomes] |
| rs67549383 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs67563752 | 0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs67675495 | 0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs67835080 | 0.85[EUR][1000 genomes] |
| rs73325382 | 0.80[AFR][1000 genomes] |
| rs7344617 | 0.83[YRI][hapmap] |
| rs7348841 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs73624726 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs751860 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs751861 | 0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs755017 | 0.94[ASW][hapmap];0.93[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];0.85[JPT][hapmap];0.95[LWK][hapmap];0.94[MEX][hapmap];0.89[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes] |
| rs755920 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ARFRP1 | Distal transcriptional regulation |
| ZGPAT | Distal transcriptional regulation |
| SLC2A4RG | Distal transcriptional regulation |
| ABHD16B | Distal transcriptional regulation |
| ENSG00000268858 | Distal transcriptional regulation |
| TPD52L2 | Distal transcriptional regulation |
| ENSG00000270047 | Distal transcriptional regulation |
| ENSG00000269223 | Distal transcriptional regulation |
| ZBTB46 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014