SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 4)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10875712	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[LWK][hapmap];0.86[MEX][hapmap]
rs11609253	0.80[MEX][hapmap]
rs4760607	1.00[CHB][hapmap]
rs7964582	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.97[LWK][hapmap];0.93[MEX][hapmap];0.80[MKK][hapmap];0.85[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
TMEM106C	Proximal transcriptional regulation
ASB8	Distal transcriptional regulation
VDR	Distal transcriptional regulation
ENSG00000222635	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 2)

eQTL related gene	Source
TMEM106C	SCAN
AQP6	SCAN