SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 7)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11168325	0.90[YRI][hapmap]
rs11609253	0.80[MEX][hapmap]
rs2286024	0.82[MEX][hapmap];0.85[TSI][hapmap]
rs4760607	1.00[CHB][hapmap]
rs4760674	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[LWK][hapmap];0.86[MEX][hapmap]
rs7307880	0.82[MEX][hapmap];0.89[TSI][hapmap]
rs7964582	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.86[LWK][hapmap];0.93[MEX][hapmap];0.91[MKK][hapmap];0.86[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
TMEM106C	Distal transcriptional regulation
COL2A1	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 6)