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rVarBase
SNP Report
Basic Infomation
Name
rs4760607  
dbSNP
Location
chr:12,48365265
Allele
G/T
LD-proxy of rSNPs(r
2
>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10875712
1.00[CHB][hapmap]
rs1635554
1.00[CEU][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap];0.92[EUR][1000 genomes]
rs1635557
0.92[EUR][1000 genomes]
rs17122571
0.82[MEX][hapmap]
rs1793959
0.91[CEU][hapmap];1.00[MEX][hapmap]
rs4760674
1.00[CHB][hapmap]
rs7964582
1.00[CHB][hapmap]
rSNP related genes
Symbol
Regulation type
COL2A1
Distal transcriptional regulation
TMEM106C
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)