SNP Report
Basic Infomation
| Name | rs4647599 dbSNP |
|---|---|
| Location | chr:11,65120578 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs17145218 | 0.86[EUR][1000 genomes] |
| rs4149830 | 0.86[EUR][1000 genomes] |
| rs4647575 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4647576 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4647577 | 1.00[EUR][1000 genomes] |
| rs4647587 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs60763559 | 0.97[EUR][1000 genomes] |
| rs60933608 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs61732319 | 0.97[EUR][1000 genomes] |
| rs61742143 | 0.80[EUR][1000 genomes] |
| rs61743983 | 0.80[EUR][1000 genomes] |
| rs61746998 | 0.80[EUR][1000 genomes] |
| rs7127811 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs73482271 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7947014 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7950149 | 0.97[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DPF2 | Proximal transcriptional regulation |
| TIGD3 | Proximal transcriptional regulation |
| CDC42EP2 | Distal transcriptional regulation |
| DPF2 | Distal transcriptional regulation |
| MALAT1 | Distal transcriptional regulation |
| ENSG00000270117 | Distal transcriptional regulation |
| POLA2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014