SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 16)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs17145218	0.86[EUR][1000 genomes]
rs4149830	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs4647576	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4647577	1.00[EUR][1000 genomes]
rs4647587	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4647599	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60763559	0.97[EUR][1000 genomes]
rs60933608	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61732319	0.97[EUR][1000 genomes]
rs61742143	0.80[EUR][1000 genomes]
rs61743983	0.80[EUR][1000 genomes]
rs61746998	0.80[EUR][1000 genomes]
rs7127811	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73482271	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7947014	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7950149	0.97[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
DPF2	Proximal transcriptional regulation
TIGD3	Distal transcriptional regulation
DPF2	Distal transcriptional regulation
MALAT1	Distal transcriptional regulation
ENSG00000255404	Distal transcriptional regulation
POLA2	Distal transcriptional regulation
DPF2	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 2)

eQTL related gene	Source
DNAL4	SCAN
LOC387778	Pritchard