SNP Report
Basic Infomation
| Name | rs4149830 dbSNP |
|---|---|
| Location | chr:11,65087418 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs17145218 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4647575 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs4647576 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs4647577 | 0.86[EUR][1000 genomes] |
| rs4647587 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs4647599 | 0.86[EUR][1000 genomes] |
| rs57002824 | 0.86[EUR][1000 genomes] |
| rs57994718 | 0.86[EUR][1000 genomes] |
| rs60763559 | 0.83[EUR][1000 genomes] |
| rs60933608 | 0.83[EUR][1000 genomes] |
| rs61732319 | 0.83[EUR][1000 genomes] |
| rs61742143 | 0.89[EUR][1000 genomes] |
| rs61743983 | 0.89[EUR][1000 genomes] |
| rs61746998 | 0.89[EUR][1000 genomes] |
| rs7127811 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs73482271 | 0.83[EUR][1000 genomes] |
| rs7947014 | 0.86[EUR][1000 genomes] |
| rs7950149 | 0.83[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| POLA2 | Distal transcriptional regulation |
| CDC42EP2 | Distal transcriptional regulation |
| CDC42EP2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014