SNP Report
Basic Infomation
| Name | rs4550297 dbSNP |
|---|---|
| Location | chr:12,48083502 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs36123489 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4348981 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56967344 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57671593 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58292976 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59702452 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60873325 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7303895 | 1.00[YRI][hapmap];0.84[AFR][1000 genomes] |
| rs7304743 | 1.00[YRI][hapmap];0.84[AFR][1000 genomes] |
| rs7311790 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7315257 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73300653 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73300658 | 0.80[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs73300663 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73300666 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73300680 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RPAP3 | Distal transcriptional regulation |
| ENSG00000257433 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| FLJ21908 | Pritchard |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014