SNP Report
Basic Infomation
| Name | rs35072483 dbSNP |
|---|---|
| Location | chr:20,44726733 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10485438 | 0.81[EUR][1000 genomes] |
| rs11086996 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12480077 | 0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12480308 | 0.84[EUR][1000 genomes] |
| rs12480309 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs16991058 | 0.83[EUR][1000 genomes] |
| rs17450969 | 0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs17463884 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17464657 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1950174 | 0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2206892 | 0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4410344 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4410345 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4414741 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4578917 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4810484 | 0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs55947855 | 0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6032638 | 0.80[EUR][1000 genomes] |
| rs62215581 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs62215583 | 0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs62215598 | 0.82[EUR][1000 genomes] |
| rs62215600 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs62215604 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7266662 | 0.81[EUR][1000 genomes] |
| rs7271670 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7273914 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs8125495 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RPL13P2 | Proximal transcriptional regulation |
| NCOA5 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014