SNP Report
Basic Infomation
| Name | rs17463884 dbSNP |
|---|---|
| Location | chr:20,44701287 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10485438 | 1.00[ASW][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs11086996 | 0.87[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs12480077 | 0.84[EUR][1000 genomes] |
| rs12480308 | 0.86[EUR][1000 genomes] |
| rs12480309 | 0.86[EUR][1000 genomes] |
| rs16991058 | 1.00[ASW][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs17450969 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs17464657 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1950174 | 1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2206892 | 1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs35072483 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs4410344 | 0.86[EUR][1000 genomes] |
| rs4410345 | 0.86[EUR][1000 genomes] |
| rs4414741 | 0.86[EUR][1000 genomes] |
| rs4578917 | 0.86[EUR][1000 genomes] |
| rs4810484 | 0.94[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs55947855 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6032637 | 1.00[JPT][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.83[EUR][1000 genomes] |
| rs6032638 | 1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.84[EUR][1000 genomes] |
| rs62215581 | 0.94[AFR][1000 genomes];0.84[EUR][1000 genomes] |
| rs62215583 | 0.87[EUR][1000 genomes] |
| rs62215598 | 0.94[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs62215600 | 0.83[EUR][1000 genomes] |
| rs62215604 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7266662 | 0.94[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7271670 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7273914 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8125495 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PCIF1 | Distal transcriptional regulation |
| NCOA5 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014