SNP Report
Name | rs34639107   dbSNP |
---|---|
Location | chr:1,114362118 |
Allele | A/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11102659 | 1.00[ASN][1000 genomes] |
rs11102679 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11102680 | 0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12060671 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs12063602 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12064048 | 1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12072840 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12086911 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12090627 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12094849 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12095398 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12097198 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1592335 | 1.00[ASN][1000 genomes] |
rs55946257 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs998315 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
PTPN22 | Proximal transcriptional regulation |
ENSG00000231128 | Proximal transcriptional regulation |
ENSG00000231128 | Distal transcriptional regulation |
AP4B1 | Distal transcriptional regulation |
ENSG00000231128 | RNA binding protein mediated regulation |
PTPN22 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014