SNP Report
Basic Infomation
| Name | rs12072840 dbSNP |
|---|---|
| Location | chr:1,114353558 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11102679 | 0.85[EUR][1000 genomes] |
| rs11102680 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12060671 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs12063602 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12064048 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12086911 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12090627 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12094849 | 0.84[EUR][1000 genomes] |
| rs12095398 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12097198 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34639107 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35061908 | 1.00[ASN][1000 genomes] |
| rs41274108 | 1.00[ASN][1000 genomes] |
| rs55946257 | 1.00[AMR][1000 genomes] |
| rs61013095 | 1.00[ASN][1000 genomes] |
| rs61324555 | 1.00[ASN][1000 genomes] |
| rs998315 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000231128 | Proximal transcriptional regulation |
| HIPK1 | Distal transcriptional regulation |
| ENSG00000235527 | Distal transcriptional regulation |
| PHTF1 | Distal transcriptional regulation |
| COPS5 | Distal transcriptional regulation |
| VAV3 | Distal transcriptional regulation |
| AP4B1 | Distal transcriptional regulation |
| DCLRE1B | Distal transcriptional regulation |
| OLFML3 | Distal transcriptional regulation |
| CSDE1 | Distal transcriptional regulation |
| FIBCD1 | Distal transcriptional regulation |
| ENSG00000267280 | Distal transcriptional regulation |
| C17orf82 | Distal transcriptional regulation |
| ENSG00000267637 | Distal transcriptional regulation |
| PARD6B | Distal transcriptional regulation |
| ENSG00000201524 | Distal transcriptional regulation |
| RSBN1 | Distal transcriptional regulation |
| SIKE1 | Distal transcriptional regulation |
| ENSG00000231128 | Distal transcriptional regulation |
| AP4B1-AS1 | Distal transcriptional regulation |
| RSBN1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014