SNP Report
Basic Infomation
| Name | rs11102680 dbSNP |
|---|---|
| Location | chr:1,114303488 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11102659 | 1.00[ASN][1000 genomes] |
| rs11102679 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11578447 | 1.00[ASN][1000 genomes] |
| rs12060671 | 0.83[AMR][1000 genomes] |
| rs12063602 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12064048 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12072840 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12086911 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12090627 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12094849 | 1.00[ASN][1000 genomes] |
| rs12095398 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12097198 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1592335 | 1.00[ASN][1000 genomes] |
| rs34639107 | 0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55946257 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs998315 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PHTF1 | Proximal transcriptional regulation |
| SNAI1 | Distal transcriptional regulation |
| PHTF1 | Distal transcriptional regulation |
| AP4B1 | Distal transcriptional regulation |
| DCLRE1B | Distal transcriptional regulation |
| RSBN1 | Distal transcriptional regulation |
| ENSG00000254477 | Distal transcriptional regulation |
| STX3 | Distal transcriptional regulation |
| ENSG00000231128 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014