SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 11)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs2425879	0.82[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2425880	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2425881	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3091520	0.87[JPT][hapmap]
rs3092462	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3092495	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs383551	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs6124828	0.94[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6124830	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73622682	0.80[ASN][1000 genomes]
rs742594	0.82[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
SLC13A3	Proximal transcriptional regulation
TP53RK	Distal transcriptional regulation
SLC13A3	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 41)