SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 11)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs2425879	1.00[ASW][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs2425880	0.95[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2425881	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2425885	0.84[YRI][hapmap]
rs3092098	0.87[JPT][hapmap]
rs3092462	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs383551	0.83[JPT][hapmap]
rs6124828	1.00[ASW][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs6124830	0.87[AFR][1000 genomes]
rs73622682	0.80[ASN][1000 genomes]
rs742594	0.91[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
SLC13A3	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 31)