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rVarBase
SNP Report
Basic Infomation
Name
rs3092495  
dbSNP
Location
chr:20,45240102
Allele
A/C
LD-proxy of rSNPs(r
2
>0.8) (count: 3)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs3092098
0.82[CHB][hapmap];0.86[JPT][hapmap]
rs383551
0.83[ASW][hapmap];0.95[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs742594
0.81[CHB][hapmap];0.86[JPT][hapmap]
rSNP related genes
Symbol
Regulation type
SLC13A3
Distal transcriptional regulation
SLC13A3
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
eQTL related gene
Source
TTPAL
SCAN
KCNS1
SCAN
ELMO2
SCAN