SNP Report
Basic Infomation
| Name | rs296542 dbSNP |
|---|---|
| Location | chr:1,200889719 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10753886 | 0.83[EUR][1000 genomes] |
| rs11580144 | 0.90[CEU][hapmap] |
| rs167199 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs1934438 | 0.81[EUR][1000 genomes] |
| rs296513 | 0.90[CEU][hapmap] |
| rs296519 | 0.91[CEU][hapmap] |
| rs296561 | 1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs296564 | 1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs296565 | 1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs296566 | 1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs296567 | 0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs296568 | 0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs296569 | 1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs296571 | 1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs438443 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MROH3P | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014