SNP Report
Basic Infomation
| Name | rs167199 dbSNP |
|---|---|
| Location | chr:1,200905872 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10753886 | 0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11580144 | 0.90[CEU][hapmap] |
| rs296513 | 0.90[CEU][hapmap] |
| rs296519 | 0.91[CEU][hapmap] |
| rs296542 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs296561 | 1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs296564 | 1.00[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs296565 | 1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs296566 | 1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs296567 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs296568 | 0.89[EUR][1000 genomes] |
| rs296569 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs296571 | 1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs438443 | 0.89[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000201032 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014